Welcome to the Shiny App for Visualizing EndoC-βH1 and Human Islet Genomics Data!
Loading data, please wait...
Welcome to the Shiny App for Visualizing EndoC-βH1 and Human Islet Genomics Data!
Click here for a guided tutorial of the app!
Download Tutorial Document
1a. Select Data Types to Visualize
EndoC-βH1 Data
Hi-C
ChIA-PET
Chromatin-States
ATAC-seq
RNA-seq
Genes
Human Islet Data
Hi-C
Chromatin-States
ATAC-seq
RNA-seq
1b. Choose color schemes
EndoC-βH1 Color
red
blue
green
purple
orange
yellow
black
brown
pink
grey
Islet Color
red
blue
green
purple
orange
yellow
black
brown
pink
grey
2a. Enter Gene Symbol (to get genome location)
Gene symbol (e.g., ISL1):
Get Gene Coordinates
2b. Or Enter Genome Coordinates (hg19) manually
Chromosome number (chr1-chr22):
Chromosome start (no commas):
Chromosome end (no commas):
3. View Data
Submit Coordinates
Author:
Nathan Lawlor (nathan.lawlor03@gmail.com)
Visit the Stitzel Lab Here!
Acknowledgements:
This app is a wrapper for the R package Sushi:
Check out Sushi Here!
Questions?
Visit the App Github page here!
Multiomic Plot
Selected Coordinates
Overlapping GWAS SNPs
Nearby Chromatin Interactions
EndoC Hi-C
Islet Hi-C
EndoC ChIA-PET
EndoC Chromatin States
Islet Chromatin States
EndoC ATAC-seq
Islet ATAC-seq
Genes
Download Plot
Highlight Genome Coordinates on Plot (Optional)
Highlight Regions?
Yes
No
Chromosome start1 (no commas):
Chromosome end1 (no commas):
Chromosome start2 (no commas):
Chromosome end2 (no commas):
Zoom In/Out
Zoom In 1.5X
Zoom In 3X
Zoom Out 1.5X
Zoom Out 3X
Plot
Download GWAS SNPs
Download Nearby Interactions
Download EndoC Hi-C
Download Islet Hi-C
Download EndoC ChIAPET
Download EndoC Chromatin States
Download Islet Chromatin States
Download EndoC ATAC-seq
Download Islet ATAC-seq
Download Genes
